#!/bin/bash # # Developed by Fred Weinhaus 9/17/2009 .......... revised revised 7/11/2017 # # ------------------------------------------------------------------------------ # # Licensing: # # Copyright © Fred Weinhaus # # My scripts are available free of charge for non-commercial use, ONLY. # # For use of my scripts in commercial (for-profit) environments or # non-free applications, please contact me (Fred Weinhaus) for # licensing arrangements. My email address is fmw at alink dot net. # # If you: 1) redistribute, 2) incorporate any of these scripts into other # free applications or 3) reprogram them in another scripting language, # then you must contact me for permission, especially if the result might # be used in a commercial or for-profit environment. # # My scripts are also subject, in a subordinate manner, to the ImageMagick # license, which can be found at: http://www.imagemagick.org/script/license.php # # ------------------------------------------------------------------------------ # #### # # USAGE: rmsecorr [-s] [-p] [-m mode] [-c color] smallfile largefile corrfile [matchfile] # USAGE: rmsecorr [-h or -help] # # OPTIONS: # # -s stretch the correlation surface to full dynamic range so # that the best match is full white; default is unstretched # -p apply a pseudocolor to the correlation surface image; # default is no pseudocoloring # -m mode mode for matchfile output; choices are: draw, overlay or # best; draw colored box at best match location, overlay # the small image at match location on a one half transparent # large image or output the best match subsection; # default=draw # -c color color to use for drawing box on large image where best # matched subsection was found; default=black # ### # # NAME: RMSECORR # # PURPOSE: To compute the root mean squared correlation surface to find where # a small image best matches within a larger image. # # DESCRIPTION: RMSECORR computes the root mean squared correlation surface # (image) to find where a small (first) image best matches within a larger # (second) image. Any alpha channel on either image will be removed # automatically before processing. Values in the correlation surface can vary # between 0 and 1, with a perfect match being 0. The correlation image will be # negated automatically for easier viewing. # # # OPTIONS: # # -s ... Stretch the root mean squared correlation surface image to full # dynamic range. Default is no stretch. # # -p ... Apply a pseudocoloring to the root mean squared correlation surface # image where red corresponds to the highest values and purple to the lowest # values. Default is no pseudocoloring. # # -m mode ... MODE is the layout mode for the optional matchfile image. # Choices are draw (or d), overlay (or o) or best (or b). Draw simply draws # a colored box outline at the best match subsection in the larger image. # Overlay inserts the small image at the match location of a 30% opaque # version of the larger image. Best outputs the subsection of the larger image # that best matches the smaller image. The default="draw". Ignored if no # matchfile specified. # # -c color ... COLOR is the color to use to draw the outline of the best # matching subsection in the larger image when mode=draw. Any valid IM color # specification may be used. The default=black. # # REQUIREMENTS: IM version 6.5.4-7 or higher, but compiled with HDRI enabled # in any quantum level of Q8, Q16 or Q32. Also requires the FFTW delegate # library. # # REFERENCES: # http://en.wikipedia.org/wiki/Root_mean_squared_error # # See http://www.fmwconcepts.com/imagemagick/fourier_transforms/fourier.html # for more details about the Fourier Transform with ImageMagick. # # CAVEAT: No guarantee that this script will work on all platforms, # nor that trapping of inconsistent parameters is complete and # foolproof. Use At Your Own Risk. # # ###### # # set default values stretch="no" #yes or no pseudocolor="no" #yes or no mode="draw" #draw or overlay color="black" #any valid IM color transp=0.3 #transparency of large image in mode=overlay # set directory for temporary files tmpdir="/tmp" # set up functions to report Usage and Usage with Description PROGNAME=`type $0 | awk '{print $3}'` # search for executable on path PROGDIR=`dirname $PROGNAME` # extract directory of program PROGNAME=`basename $PROGNAME` # base name of program usage1() { echo >&2 "" echo >&2 "$PROGNAME:" "$@" sed >&2 -e '1,/^####/d; /^###/g; /^#/!q; s/^#//; s/^ //; 4,$p' "$PROGDIR/$PROGNAME" } usage2() { echo >&2 "" echo >&2 "$PROGNAME:" "$@" sed >&2 -e '1,/^####/d; /^######/g; /^#/!q; s/^#*//; s/^ //; 4,$p' "$PROGDIR/$PROGNAME" } # function to report error messages errMsg() { echo "" echo $1 echo "" usage1 exit 1 } # function crossCorr to compute complex product of (A*)x(B) # where A* is complex conjugate # A*=a1-ia2; B=b1+ib2 # (A*)x(B)=(a1xb1+a2*b2) + i(a1xb2-a2xb1) crossCorr() { img1=$1 img2=$2 # note both images contain 2 frames if [ "$im_version" -ge "06080701" ]; then convert \( $img1 -complex conjugate \) $img2 -complex multiply \ $fouriernorm +ift "$dir/tmp0.mpc" else convert $img1 $img2 \ \( -clone 0 -clone 2 -define compose:clamp=false -compose multiply -composite \) \ \( -clone 1 -clone 3 -define compose:clamp=false -compose multiply -composite \) \ \( -clone 4 -clone 5 -define compose:clamp=false -compose plus -composite \) \ \( -clone 0 -clone 3 -define compose:clamp=false -compose multiply -composite \) \ \( -clone 1 -clone 2 -define compose:clamp=false -compose multiply -composite \) \ \( -clone 7 -clone 8 +swap -define compose:clamp=false -compose minus -composite \) \ -delete 0-5,7,8 $fouriernorm +ift "$dir/tmp0.mpc" fi } # function to test for minus at start of value of second part of option 1 or 2 checkMinus() { test=`echo "$1" | grep -c '^-.*$'` # returns 1 if match; 0 otherwise [ $test -eq 1 ] && errMsg "$errorMsg" } # test for correct number of arguments and get values if [ $# -eq 0 ] then # help information echo "" usage2 exit 0 elif [ $# -gt 10 ] then errMsg "--- TOO MANY ARGUMENTS WERE PROVIDED ---" else while [ $# -gt 0 ] do # get parameter values case "$1" in -h|-help) # help information echo "" usage2 exit 0 ;; -s) # get stretch stretch="yes" ;; -p) # get pseudocolor pseudocolor="yes" ;; -m) # mode shift # to get the next parameter # test if parameter starts with minus sign errorMsg="--- INVALID MODE SPECIFICATION ---" checkMinus "$1" mode=`echo "$1" | tr "[:upper:]" "[:lower:]"` case "$mode" in draw|d) mode="draw" ;; overlay|o) mode="overlay" ;; best|b) mode="best" ;; *) errMsg "--- MODE=$mode IS NOT A VALID CHOICE ---" ;; esac ;; -c) # get color shift # to get the next parameter # test if parameter starts with minus sign errorMsg="--- INVALID COLOR SPECIFICATION ---" checkMinus "$1" color="$1" ;; -) # STDIN and end of arguments break ;; -*) # any other - argument errMsg "--- UNKNOWN OPTION ---" ;; *) # end of arguments break ;; esac shift # next option done # # get infile, filtfile and outfile smallfile="$1" largefile="$2" corrfile="$3" matchfile="$4" fi # test that infile provided [ "$smallfile" = "" ] && errMsg "NO SMALL INPUT FILE SPECIFIED" # test that filtfile provided [ "$largefile" = "" ] && errMsg "NO LARGE INPUT FILE SPECIFIED" # test that outfile provided [ "$corrfile" = "" ] && errMsg "NO CORRELATION FILE SPECIFIED" # Setup directory for temporary files # On exit remove ALL -- the whole directory of temporary images dir="$tmpdir/$PROGNAME.$$" trap "rm -rf $dir;" 0 trap "rm -rf $dir; exit 1" 1 2 3 15 #trap "rm -rf $dir; exit 1" ERR mkdir "$dir" || { echo >&2 "$PROGNAME: Unable to create working dir \"$dir\" -- ABORTING" exit 10 } # read the large and small images into the temp files and test validity. convert -quiet "$smallfile" -alpha off +repage "$dir/tmpA1.mpc" || errMsg "--- FILE $smallfile DOES NOT EXIST OR IS NOT AN ORDINARY FILE, NOT READABLE OR HAS ZERO SIZE ---" convert -quiet "$largefile" -alpha off +repage "$dir/tmpA2.mpc" || errMsg "--- FILE $largefile DOES NOT EXIST OR IS NOT AN ORDINARY FILE, NOT READABLE OR HAS ZERO SIZE ---" # test for valid version of IM im_version=`convert -list configure | \ sed '/^LIB_VERSION_NUMBER */!d; s//,/; s/,/,0/g; s/,0*\([0-9][0-9]\)/\1/g' | head -n 1` [ "$im_version" -lt "06050407" ] && errMsg "--- REQUIRES IM VERSION 6.5.4-7 OR HIGHER ---" # test for hdri enabled if [ "$im_version" -ge "07000000" ]; then hdri_on=`convert -version | grep "HDRI"` else hdri_on=`convert -list configure | grep "enable-hdri"` fi [ "$hdri_on" = "" ] && errMsg "--- REQUIRES HDRI ENABLED IN IM COMPILE ---" if [ "$im_version" -ge "07000000" ]; then identifying="magick identify" else identifying="identify" fi # get image dimensions to be sure that infile1 is smaller than infile2 ws=`$identifying -ping -format "%w" "$dir/tmpA1.mpc"` hs=`$identifying -ping -format "%h" "$dir/tmpA1.mpc"` wlo=`$identifying -ping -format "%w" "$dir/tmpA2.mpc"` hlo=`$identifying -ping -format "%h" "$dir/tmpA2.mpc"` [ $ws -gt $wlo ] && errMsg "--- SECOND IMAGE MUST BE WIDER THAN FIRST IMAGE ---" [ $hs -gt $hlo ] && errMsg "--- SECOND IMAGE MUST BE TALLER THAN FIRST IMAGE ---" # make large image even dimensions and square wl=`convert xc: -format "%[fx:2*ceil($wlo/2)]" info:` hl=`convert xc: -format "%[fx:2*ceil($hlo/2)]" info:` # test if large image is square and if not, then pad with black test1=`convert xc: -format "%[fx:($wl==$hl)?1:0]" info:` if [ $test1 -eq 0 ]; then # not square so get larger dimension maxdim=`convert xc: -format "%[fx:max($wl,$hl)]" info:` wl=$maxdim hl=$maxdim fi # test if new size is same as original test2=`convert xc: -format "%[fx:($wl==$wlo && $hl==$hlo)?1:0]" info:` if [ $test2 -eq 0 ]; then convert "$dir/tmpA2.mpc" -background black -extent ${wl}x${hl} "$dir/tmpA2.mpc" fi #echo "ws=$ws; hs=$hs; wlo=$wlo; hlo=$hlo; wl=$wl; hl=$hl; test2=$test2;" : ' C = sqrt( sum( (Sr - Lr)^2 + (Sg - Lg)^2 + (Sr - Lr)^2 )/3 )/Ns ) C = sqrt( ave( (Sr - Lr)^2 + (Sg - Lg)^2 + (Sr - Lr)^2 )/3 ) ) where A X B = I(F(A*)F(B)] and A* is complex conjugate of A, F=FFT and I=IFT L is large image. S is the small image. U is a unit image (value=1) Both S and U are padded at right and bottom to size of L. D = ave(S-L)^2 = ( sum(S*S) -2*sum(SxL) + sum(L*L) ) / Ns D = ave(S-L)^2 = ( sum(S^2)ext -2*sum(SxL) + sum(UxL^2) ) / Ns C = sqrt( (Dr + Dg + Db)/3 ) sum(S^2)ext / Ns is the average of the small image made into an image the size of the large image ' # compute N=wsxhs = total pixels in small image Ns=`convert xc: -format "%[fx:$ws*$hs]" info:` Nl=`convert xc: -format "%[fx:$wl*$hl]" info:` # get factors fact1=`convert xc: -format "%[fx:1/$Ns]" info:` #echo "Ns=$Ns; Nl=$Nl fact1=$fact1;" if [ "$im_version" -ge "06080610" ]; then fouriernorm="-define fourier:normalize=inverse" normfact="" else # default is forward normalization fouriernorm="" # requires that normalization of FFT be unnormalized normfact="-evaluate multiply $Nl" fi #echo "fouriernorm=$fouriernorm; normfact=$normfact" # take FFT of large image convert "$dir/tmpA2.mpc" $fouriernorm +fft "$dir/tmpL.mpc" # take FFT of square of large image convert "$dir/tmpA2.mpc" "$dir/tmpA2.mpc" -define compose:clamp=false -compose multiply -composite $fouriernorm +fft "$dir/tmpL2.mpc" # pad small image to size of padded large image and take FFT convert "$dir/tmpA1.mpc" \ -background black -extent ${wl}x${hl} $fouriernorm +fft $normfact "$dir/tmpS.mpc" # create identity U image (value=1) and pad and take FFT convert -size ${ws}x${hs} xc:white -background black -extent ${wl}x${hl} $fouriernorm +fft $normfact "$dir/tmpU.mpc" # create (U X L^2)/Ns crossCorr "$dir/tmpU.mpc" "$dir/tmpL2.mpc" convert "$dir/tmp0.mpc" -evaluate multiply $fact1 "$dir/tmpL2.mpc" # create (S x L)/Ns crossCorr "$dir/tmpS.mpc" "$dir/tmpL.mpc" convert "$dir/tmp0.mpc" -evaluate multiply $fact1 "$dir/tmpSL.mpc" # create square of small image, get mean and create image the size of large image with constant meanS2 value meanS2=`convert "$dir/tmpA1.mpc" "$dir/tmpA1.mpc" -define compose:clamp=false -compose multiply -composite -format "%[fx:100*mean.r]\%,%[fx:100*mean.g]\%,%[fx:100*mean.b]\%" info:` convert -size ${wl}x${hl} xc:"rgb($meanS2)" "$dir/tmpS2.mpc" #echo "meanS2=$meanS2" # combine terms, separate channels, get mean, take square root convert "$dir/tmpS2.mpc" "$dir/tmpL2.mpc" \( "$dir/tmpSL.mpc" -evaluate multiply -2 \) -evaluate-sequence sum \ -separate +channel -evaluate-sequence mean -evaluate pow 0.5 \ -crop ${wlo}x${hlo}+0+0 +repage \ "$dir/tmp0.mpc" # setup pseudocolor lut if [ "$pseudocolor" = "yes" ]; then convert xc:blueviolet xc:blue xc:cyan xc:green1 \ xc:yellow xc:orange xc:red +append \ -filter cubic -resize 256x1 "$dir/tmpP.mpc" colorize="$dir/tmpP.mpc -clut" else colorize="" fi # setup stretch if [ "$stretch" = "yes" ]; then convert \( "$dir/tmp0.mpc" -auto-level \) -negate $colorize "$corrfile" else convert "$dir/tmp0.mpc" -negate $colorize "$corrfile" fi #echo "get match" if [ "$im_version" -ge "06080610" ]; then str=`$identifying -define identify:locate=minimum -define identify:limit=1 $dir/tmp0.mpc | tail -n +2` min=`echo $str | sed -n 's/^.*[(]\(.*\)[)].*$/\1/p'` coords=`echo $str | cut -d\ -f4` echo "" echo "Match Coords: ($coords) And Score In Range 0 to 1: ($min)" echo "" else max=`convert "$dir/tmp0.mpc" -format "%[fx:maxima]" info:` min=`convert "$dir/tmp0.mpc" -format "%[fx:minima]" info:` str=`convert "$dir/tmp0.mpc" -fx "u<=($min+quantumscale)?debug(u):0" null: 2>&1` coords=`echo "$str" | sed -n 's/^.*\[\([0-9]*,[0-9]*\)\]\.red.*$/\1/p'` echo "" echo "Match Coords: ($coords) And Score In Range 0 to 1: ($min)" echo "" fi # compute subsection ulx=`echo $coords | cut -d, -f 1` uly=`echo $coords | cut -d, -f 2` subsection="${ws}x${hs}+$ulx+$uly" #echo "$subsection" if [ "$matchfile" != "" -a "$mode" = "draw" ]; then lrx=$(($ulx+$ws)) lry=$(($uly+$hs)) #echo "ulx=$ulx; uly=$uly; lrx=$lrx; lry=$lry" convert $dir/tmpA2.mpc[${wlo}x${hlo}+0+0] -fill none -stroke "$color" \ -draw "rectangle $ulx,$uly $lrx,$lry" "$matchfile" elif [ "$matchfile" != "" -a "$mode" = "overlay" ]; then convert \( "$dir/tmpA2.mpc" -alpha on -channel a -evaluate set $transp% +channel \) "$dir/tmpA1.mpc" \ -geometry "$subsection" -compose over -composite "$matchfile" elif [ "$matchfile" != "" -a "$mode" = "best" ]; then convert $dir/tmpA2.mpc[${ws}x${hs}+${ulx}+${uly}] "$matchfile" fi exit 0